Ausin I,Feng S,Yu C, Liu W, Kuo HY, Jacobsen EL, Zhai J, Gallego-Bartolome J, Wang L, Egertsdotter U, Street NR, Jacobsen SE and Wang H.(2016) DNA methylome of the 20-gigabase Norway spruce genome Proc. Nat. Acad. Sci. U. S. A doi/10.1073/pnas.1618019113.
Groth M, Moissiard G, Wirtz M, Wang H, Garcia-Salinas C, Ramos-Parra P A, Bischof S, Feng S, Cokus SJ, John A, Smith DC, Zhai J, Hale CJ, Long JA, Hell R, Diaz de la Garza RI, Jacobsen SE.(2016) MTHFD1 controls DNA methylation in Arabidopsis Nature Communications 7:11640.
Harris CJ, Husmann D, Liu W, Kasmi FE, Wang H, Papikian A, Pastor WA, Moissiard G, Vashisht AA, Dang JL, Wohlschlegel JA, Jacobsen SE.(2016) Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes PLOS Genetics doi:10.1371/journal.pgen.1005998.

Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I.(2015) CG gene body DNA methylation changes and evolution of duplicated genes in cassava Proc Natl Acad Sci U S A 112(44):13729-13734.

Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE.(2015)A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis Cell 163(2):445-455.

  Xuehua Zhong., Christopher J. Hale., Minh Nguyen., Israel Ausin., Martin Groth., Jonathan Hetzela., Ajay A. Vashisht., Ian R. Henderson., James A. Wohlschlegel and Steven E. Jacobsen.(2015) DOMAINS REARRANGED METHYLTRANSFERASE3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis Proc Natl Acad Sci U S A 112: 911-916.

  Martin Groth.,Hume Stroud.,Suhua Feng.,Maxim V.C.Greenberg.,Ajay A.Vashisht.,James A.Wohlschlege.,Steven E.Jacobsen and Israel Ausin.(2014) SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation Proc Natl Acad Sci U S A 111(49):17666-17671.

  John J. Vincent,Yun Huang, Pao-Yang Chen, Suhua Feng, Joseph H. Calvopina, Kevin Nee, Serena A.Lee, Thuc Le, Alexander J. Yoon, Kym Faull, Guoping Fan, Anjana Rao, Steven E.Jacobsen, Matteo Pellegrini and Amander T. Clark. (2013) Stage-specific rolesfor Tet1 and Tet2 in DNA demethylation in primordial germ cells Cell Stem Cell 12:470-478.

 Yifeng Xu,Yizhong Wang, Hume Stroud, Xiaofeng Gu, Bo Sun, Eng-Seng Gan, Kian-Hong Ng,Steven E. Jacobsen, Yuehui He, and Toshiro Ito. (2013) A Matrix Protein Silences Transposons andRepeats through Interaction with Retinoblastoma-Associated Proteins Current Biology 23:345-350.
  Hume Stroud,Maxim V.C. Greenberg, Suhua Feng, Yana V.Bernatavichute, Steven E. Jacobsen. (2013) Comprehensive Analysis of SilencingMutants Reveals Complex Regulation of the Arabidopsis Methylome Cell 152: 352-364.
  AngeliqueDeleris, Hume Stroud, Yana Bernatavichute,Elizabeth Johnson, Gregor Klein, Daniel Schubert, and Steven E. Jacobsen. (2012) Loss of the DNA Methyltransferase MET1Induces H3K9 Hypermethylation at PcG Target Genes and Redistribution of H3K27 Trimethylationto Transposons in Arabidopsis thaliana PLoS Genetics 8:1-13.
  Elena Caro, HumeStroud, Maxim V. C. Greenberg, Yana V. Bernatavichute, Suhua Feng, Martin Groth,Ajay A. Vashisht, James Wohlschlegel, Steve E. Jacobsen. (2012) The SET-Domain Protein SUVR5 MediatesH3K9me2 Deposition and Silencing at Stimulus Response Genes in a DNAMethylation?Independent Manner PLoS Genetics 8:1-12.
   MariaColomé-Tatché, Sandra Cortijo, René Wardenaar, Lionel Morgado, Benoit Lahouze,Alexis Sarazin, Mathilde Etcheverry, Antoine Martin, Suhua Feng, EvelyneDuvernois-Berthet, Karine Labadie, Patrick Wincker, Steven E. Jacobsen, RitsertC. Jansen, Vincent Colot, and Frank Johannes. (2012) Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation Proc Nat Acad Sci U S A 109: 16240-16245.
   Jiamu Du, XuehuaZhong, Yana V. Bernatavichute, Hume Stroud, Suhua Feng, Elena Caro, Ajay A.Vashisht, Jolyon Terragni, Hang Gyeong Chin, Andy Tu, Jonathan Hetzel, James A.Wohlschlegel, Sriharsa Pradhan, Dinshaw J. Patel, and Steven E. Jacobsen.(2012) Dual Binding of Chromomethylase Domains to H3K9me2-containingNucleosomes Directs DNA Methylation in Plants Cell 151:167-180.
   Xuehua Zhong,Christopher J. Hale, Julie A. Law, Lianna M. Johnson, Suhua Feng, Andy Tu, andSteven E. Jacobsen. (2012) DDR complexfacilitates global association of RNA polymerase V to promoters and evolutionarily young transposons Nature Structural andMolecular Biology 19: 870-876.
   Hume Stroud,Christopher J. Hale, Suhua Feng, Elena Caro, Yannick Jacob, Scott D. Michaels,and Steven E. Jacobsen.(2012) DNA Methyltransferases Are Required to Induce Heterochromatic Re-Replication in Arabidopsis PLoS Genetics 8:1-7.
   Ramakrishna K.Chodavarapu, Suhua Feng, Bo Ding, Stacey A. Simon, David Lopez, Yulin Jia,Guo-Liang Wang, Blake C. Meyers, Steven E. Jacobsen, and Matteo Pellegrini.(2012) Transcriptome and methylome interactions in rice hybrids Proc Nat. Acad Sci U S A 109:12040-12045.
   GuillaumeMoissiard, Shawn J. Cokus, Joshua Cary, Suhua Feng, Allison C. Billi, HumeStroud, Dylan Husmann, Ye Zhan, Bryan R. Lajoie, Rachel Patton McCord,Christopher J. Hale, Wei Feng, Scott D. Michaels, Alison R. Frand, MatteoPellegrini, Job Dekker, John K. Kim, and Steven E. Jacobsen. (2012) MORC Family ATPases Required for Heterochromatin Condensation and Gene Silencing Science 336:1448-1451.
   Israel Ausin,Maxim V. C. Greenberg, Dhirendra K. Simanshu, Christopher J. Hale, Ajay A.Vashisht, Stacey A. Simon, Tzuu-fen Lee, Suhua Feng, Sophia D. Espa ola, BlakeC. Meyers, James A. Wohlschlegel, Dinshaw J. Patel, and Steven E. Jacobsen. (2012) INVOLVED IN DE NOVO 2 containingcomplex involved in RNA-directed DNA methylation in Arabidopsis Proc Nat. Acad Sci U S A 109:8374-8381.
  Tetsu Kinoshitaand Steven E. Jacobsen.(2012) Opening the Door to Epigenetics in PCP Plant Cell Physiology 53:763-765.
  FredericPontvianne, Todd Blevins, Chinmayi Chandrasekhara, Wei Feng, Hume Stroud,Steven E. Jacobsen, Scott D. Michaels, and Craig S. Pikaard. (2012) Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis Genes and Development 26:945-957.
  Hume Stroud,Sofía Otero, Bénédicte Desvoyes, Elena Ramírez-Parra, Steven E. Jacobsen, andCrisanto Gutierrez. (2012) Genome-wide analysis of histone H3.1 and H3.3variants in Arabidopsis thaliana Proc Nat. Acad Sci U S A 109:5370-5375.
  Christopher J.Hale and Steven E. Jacobsen.(2012) Equal-parenting policy Nature 482:42-44.
  Sylvain Foret,Robert Kucharski, Matteo Pellegrini, Suhua Feng, Steven E. Jacobsen, Gene E.Robinson, and Ryszard Maleszka.(2012) DNA methylation dynamics, metabolic fluxes, gene splicing, and alternativephenotypes in honey bees Proc Nat. Acad Sci U S A 109: 4968-4973.
  IsraelAusin, Maxim V.C. Greenberg, Carey Fei Li, and Steven E. Jacobsen. (2012) The splicing factor SR45 affects theRNA-directed DNA methylation pathway in Arabidopsis Epigenetics 7:29-33.
  Julie A. Law,Ajay A. Vashisht, James A. Wohlschlegel, Steven E. Jacobsen.(2011) SHH1, ahomeodomain protein required for DNA Methylation, as well As RDR2, RDM4, andchromatin remodeling factors, associate with RNA Polymerase IV PLoS Genetics 7: e1002195.
  Hume Stroud,Suhua Feng, Shannon Morey Kinney, Sriharsa Pradhan and Steven E. Jacobsen. (2011) 5-hydroxymethylcytosine is associatedwith enhancers and gene bodies in human embryonic stem cells Genome Biology 12:54.
  Pao-Yang Chen,Suhua Feng, Jong Wha J. Joo, Steven E. Jacobsen and Matteo Pellegrini. (2011) A comparative analysis of DNAmethylation across human embryonic stem cell lines Genome Biology 12: 62.
  Bifeng Yuan, JingZhang, Hongxia Wang, Lei Xiong, Qian Cai, Tina Wang, Steven E. Jacobsen,Sriharsa Pradhan, and Yinsheng Wang. (2011) 6-Thioguanine reactivatesepigenetically silenced genes in acute lymphoblastic leukemia cells byfacilitating proteasome-mediated degradation of DNMT1 Cancer Research 71:1904-1911.
  Shannon MoreyKinney, Hang Gyeong Chin, Jurate Bitinaite, Yu Zheng, Pierre Olivier Esteve,Romualdas Vaisvila, Suhua Feng, Hume Stroud, Steven E. Jacobsen and SriharsaPradhan.(2011) Tissue specific distribution and dynamic changes of 5hydroxymethylcytosine in mammalian genomes Journal of Biological Chemistry 286:24685-24693.
  Suhua Feng andSteven E. Jacobsen. (2011) Epigenetic modifications in plants: an evolutionary perspective Current Opinion in PlantBiology 14: 179-186.
Suhua Feng,Liudmilla Rubbi, Steven E. Jacobsen and Matteo Pellegrini. (2011) Determining DNA Methylation ProfilesUsing Sequencing Methods in Molecular Biology 733:223-238.
  Maxim V.C.Greenberg, Israel Ausin, Simon W.L. Chan, Shawn J. Cokus, Josh T. Cuperus,Suhua Feng, Julie A. Law, Carolyn Chu, Matteo Pellegrini, James C. Carringtonand Steven E. Jacobsen. (2011) Identification of genes required for de novo DNAmethylation in Arabidopsis Epigenetics 6:344-354.
  EerappaRajakumara, Julie A. Law, Dhirendra K. Simanshu, Philipp Voigt, Lianna M.Johnson, Danny Reinberg, Dinshaw J. Patel, and Steven E. Jacobsen. (2011) A dual flip out mechanism for 5mCrecognition by the Arabidopsis SUVH5 SRA domain and its impact on DNAmethylation and H3K9 dimethylation in vivo Genes and Development 25:137-152.
  Celina Costas,Maria de la Paz Sanchez, Hume Stroud, Yanchun Yu, Juan Carlos Oliveros, SuhuaFeng, Alberto Benguria, Irene López-Vidriero, Xiaoyu Zhang, Roberto Solano,Steven E. Jacobsen and Crisanto Gutierrez. (2011) Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks Nature Structural and Molecular Biology 18:395-400.
  AngeliqueDeleris, Maxim V.C. Greenberg, Israel Ausin, Rona W.Y. Law, GuillaumeMoissiard, Daniel Schubert and Steven E. Jacobsen. (2010) Involvement of aJumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA Methylation EMBO Reports 11:950-955.
  Suhua Feng,Steven E. Jacobsen, and Wolf Reik. (2010) Epigenetic reprogramming in plant andanimal development Science 330:622-627.
  Ian R. Henderson,Angelique Deleris, William Wong, Xuehua Zhong, Hang-Gyeong Chin, Gregory A.Horwitz, Krystyna A. Kelly, Sriharsa Pradhan and Steven E. Jacobsen. (2010) The de novo cytosine methyltransferase DRM2 requires intact UBA domains and acatalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana PLoS Genetics 6:e100118211.
  Yannick Jacob,Hume Stroud, Chantal LeBlanc, Suhua Feng, Luting Zhuo, Elena Caro, ChristianeHassel, Crisanto Gutierrez, Scott D. Michaels and Steven E. Jacobsen. (2010) Regulation of heterochromatic DNA replication by histone H3 lysine 27methyltransferases Nature 466:987-993.
  Ramakrishna K.Chodavarapu, Suhua Feng, Yana V. Bernatavichute, Pao-Yang Chen, Hume Stroud,Yanchun Yu, Jonathan Hetzel, Frank Kuo, Jin Kim, Shawn J. Cokus, David Casero,Maria Bernal, Peter Huijser, Amander T. Clark, Ute Kr?mer, Sabeeha S. Merchant,Xiaoyu Zhang, Steven E. Jacobsen, and Matteo Pellegrini. (2010) Relationship between nucleosome positioning and DNA methylation Nature 466:388-392.
  Julie A. Law,Israel Ausin, Lianna M. Johnson, Ajay A. Vashisht, Jian-Kang Zhu, James A.Wohlschlegel, and Steven E. Jacobsen. (2010) A Protein Complex Required for Polymerase V Transcripts and RNADirected DNA Methylation in Arabidopsis Current Biology 20:951-956.
  Suhua Feng, ShawnJ. Cokus, Xiaoyu Zhang, Pao-Yang Chen, Magnolia Bostick, Mary G. Goll, JonathanHetzel, Jayati Jain, Steven H. Strauss, Marnie E. Halpern, Chinweike Ukomadu,Kirsten C. Sadler, Sriharsa Pradhan, Matteo Pellegrini, and Steven E. Jacobsen.(2010) Conservation and divergence of methylation patterning in plants and animals Proc Nat. Acad Sci U S A 107:8689-8694.
  Julie A. Law andSteven E. Jacobsen. (2010) Establishing, maintaining, and modifying DNA methylation patterns in plants and animals Nature Reviews Genetics 11:204-220.
  Christian Popp,Wendy Dean, Suhua Feng, Shawn J. Cokus, Simon Andrews, Matteo Pellegrini,Steven E. Jacobsen and Wolf Reik. (2010) Genome-wide erasure of DNA methylationin mouse primordial germ cells is affected by AID deficiency Nature 463:1101-1105.
  Ian R. Henderson,Simon R. Chan, Xiaofeng Cao, Lianna Johnson and Steven E. Jacobsen.(2010) Accurate sodium bisulfite sequencing in plants Epigenetics 5:47-49.
  IsraelAusin, Todd C. Mockler, Joanne Chory and Steven E. Jacobsen. (2009) IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana Nature Structural and Molecular Biology 16:1325-1327.
  Sriharsa Pradhan,Hang Gyeong Chin, Pierre-Olivier Estève and Steven E. Jacobsen. (2009) SET7/9mediated methylation of non-histone proteins in mammalian cells Epigenetics 4:383-387.
  Kotaro Miura,Masakazu Agetsuma, Hidemi Kitano, Atsushi Yoshimura, Makoto Matsuoka, Steven E.Jacobsen and Motoyuki Ashikari. (2009) A metastable DWARF1 epigeneticmutant affecting plant stature in rice Proc Nat. Acad Sci U S A 106:11218-11223.
  Yannick Jacob,Suhua Feng, Chantal A. LeBlanc, Yana V. Bernatavichute, Hume Stroud, ShawnCokus, Lianna M. Johnson, Matteo Pellegrini, Steven E. Jacobsen and Scott D.Michaels. (2009) ATXR5 and ATXR6 are H3K27 monomethyltransferasesrequired for chromatin structure and gene silencing Nature Structural and Molecular Biology 16:763-769.
  Xiaoyu Zhang, Yana V Bernatavichute, Shawn Cokus, Matteo Pellegrini andSteven E Jacobsen. (2009) Genome-wide analysis of mono-, di- and trimethylationof histone H3 lysine 4 in Arabidopsis thaliana Genome Biology 10:R62, pages R62.1-R62.14.
  Pierre-OlivierEstève, Hang Gyeong Chin, Jack Benner, George R. Feehery, Mala Samaranayake,Gregory A. Horwitz, Steven E. Jacobsen and Sriharsa Pradhan. (2009) Regulationof DNMT1 stability through SET7-mediated lysine methylation in mammalian cells Proc Nat. Acad Sci U S A 106:5076-5081.
  Nicolas Widman,Steven E. Jacobsen and Matteo Pellegrini.(2009) Determining the conservation of DNA methylation in Arabidopsis Epigenetics 4:119-124.
    Julie A. Law andSteven E. Jacobsen. (2009) Dynamic DNA methylation Science 323:1568-1569.
  Jong Kyong Kim,Pierre Esteve, Steven E. Jacobsen and Sriharsa Pradhan.(2009) UHRF1 binds G9a and participates inp21 transcriptional regulation in mammalian cells Nucleic Acids Research 37:493-505.
  Blake C. Meyers,Michael J. Axtell, Bonnie Bartel, David P. Bartel, David Baulcombe, John L.Bowman,Xiaofeng Cao, James C. Carrington, Xuemei Chen, Pamela J. Green, SamGriffiths-Jones, Steven E. Jacobsen, Allison C. Mallory, Robert A. Martienssen,R. Scott Poethig, Yijun Qi, Herve Vaucheret, Olivier Voinnet,Yuichiro Watanabe,Detlef Weigel, and Jian-Kang Zhu.(2008) Criteria for Annotation of Plant MicroRNAs The Plant Cell 20:3186-3190.
  Lianna M.Johnson, Julie A. Law, Anuj Khattar, Ian R. Henderson and Steven E. Jacobsen.(2008) SRA-domain Proteins required for DRM2-mediated de novo DNA methylation PLoS Genetics 4 (11): e1000280.
  HideharuHashimoto, John R. Horton, Xing Zhang, Magnolia Bostick, Steven E.Jacobsen & Xiaodong Cheng. (2008) The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix Nature 455:826-829.
  Yana V.Bernatavichute, Xiaoyu Zhang, Shawn Cokus, Matteo Pellegrini & Steven E.Jacobsen. (2008) Genome-wide association of histone H3 lysine ninemethylation with CHG DNA methylation in Arabidopsis thaliana PLoS ONE 3: e3156.
  Ian R. Henderson& Steven E. Jacobsen. (2008) Sequencing sliced ends reveals microRNA targets Nature Biotechnology 26:881-882.
Edward Kraft,Magnolia Bostick, Steven E. Jacobsen & Judy Callis. (2008) ORTH/VIMproteins that regulate DNA methylation are functional ubiquitin E3 ligases Plant Journal 56:704-715.
  Ian R. Henderson& Steven E. Jacobsen. (2008) Tandem repeats upstream of the Arabidopsisendogene SDC recruit non-CG DNA methylation and initiate siRNA spreading Genes and Development 22:1597-1606.
  Alan M. Jones,Joanne Chory, Jeffrey L. Dangl, Mark Estelle Steven E. Jacobsen, Elliot M.Meyerowitz, Magnus Nordborg & Detlef Weigel. (2008) The impact ofArabidopsis on Human Health: Diversifying our portfolio Cell 133: 939-943.
  Shawn J. Cokus,Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D.Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini &Steven E. Jacobsen. (2008) Shotgun bisulphite sequencing of the Arabidopsisgenome reveals DNA methylation patterning Nature 452:215-219.
  Carey F. Li, IanR. Henderson, Liang Song, Nina Federoff, Thierry Lagrange, and Steven E.Jacobsen. (2008) Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana PLoS Genetics 4 (2): article e27.
  Juliana J. Oh,Baher N. Boctor, Cynthia A. Jimenez, Roberto Lopez, Ashley K. Koegel, Eileen O.Taschereau, Diana T. Phan, Steven E. Jacobsen, Dennis J. Slamon. (2008) Promoter methylation study of the H37/RBM5 tumor suppressor gene from the3p21.3 human lung cancer tumor suppressor locus Human Genetics 123:55-64.
  Mahmoud El-Shami,Dominique Pontier, Sylvie Lahmy, Laurence Braun, Claire Picart, Danielle Vega,Mohamed-Ali Hakimi, Steven E. Jacobsen, Richard Cooke, Thierry Lagrange. (2007) Reiterated WG/GW Motifs Form Functionallyand Evolutionarily Conserved ARGONAUTE-Binding Platforms in RNAi-related components Genes and Development 21:2539-2544.
  Magnolia Bostick,Jong Kyong Kim, Pierre-Olivier Estève, Amander Clark, Sriharsa Pradhan, StevenE. Jacobsen. (2007) UHRF1 plays a role in maintaining DNA methylation in mammalian cells Science 317:1760-1764.
  Xiaoyu Zhang,Sophie Germann, Bartlomiej J. Blus, Sepideh Khorasanizadeh, Valerie Gaudin andSteven E. Jacobsen. (2007) The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation Nature Structural and Molecular Biology 14:869-871.
  Ian R. Hendersonand Steven E. Jacobsen.(2007) Epigenetic inheritance in plants Nature 447:418-424.
  Xiaoyu Zhang,Oliver Clarenz, Shawn Cokus, Yana V. Bernatavichute, Matteo Pellegrini, JustinGoodrich, and Steven E. Jacobsen. (2007) Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis PLoS Biology 5(5):1026-1035.
  Xiaoyu Zhang, IanR. Henderson, Cheng Lu, Pamela J. Green and Steven E. Jacobsen. (2007) Role of RNA Polymerase IV in plant Small RNA Metabolism Proc Nat. Acad Sci U S A 104:4536-4541.
  Lianna M.Johnson, Magnolia Bostick, Xiaoyu Zhang, Edward Kraft, Ian Henderson, JudyCallis and Steven E. Jacobsen. (2007) The SRA methyl-cytosine-binding domainlinks DNA and histone methylation Current Biology 17:379-384.
  Xiaoyu Zhang andSteve E. Jacobsen. (2006) Genetic Analysis of DNA methyltransferases in Arabidopsis Cold SpringHarbor Symposia on Quantitative Biology 71:439-447.
  Simon W. L. Chan,Xiaoyu Zhang, Yana V. Bernatavichute, Steve E.Jacobsen. (2006) Two-step recruitment of RNA-directed DNA methylation to tandem repeats PLoS Biology 4(11):1923-1933.
   Peng Peng, SimonW. L. Chan, Govind Shah, Steve E. Jacobsen. (2006) Plant genetics:Increased outcrossing inhothead mutants Nature 443:E8-E8doi:10.1038/nature05251.
   Cheng Lu, KarthikKulkarni, Frédéric F. Souret, Ramesh MuthuValliappan, Shivakundan Shivakun danSingh Tej, R. Scott Poethig, Ian R. Henderson, Steven E. Jacobsen, WenzhongWang, Pamela J. Green, and Blake C. Meyers.(2006) MicroRNAs and other smallRNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant Genome Research 16:1276-1288.
   Xiaoyu Zhang,Junshi Yazaki, Ambika Sundaresan, Shawn Cokus, Simon W. L. Chan, Huaming Chen,Ian R. Henderson, Paul Shinn, Matteo Pellegrini, Steve E. Jacobsen and JosephR. Ecker.(2006) Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis Cell 126: 1189-1201.
   Olga Pontes,Carey Fei Li, Pedro Costa Nunes, Jeremy Haag, Thomas Ream, Alexa Vitins, StevenE. Jacobsen and Craig S. Pikaard.(2006) The Arabidopsis chromatin-modifying nuclear siRNA pathway involves anucleolar RNA processing center Cell 126:79-92.
   Carey Fei Li,Olga Pontes, Mahmoud El-Shami, Ian R. Henderson, Yana V. Bernatavichute,SimonW.-L. Chan, Thierry Lagrange, Craig S. Pikaard, and Steven E. Jacobsen.(2006) An ARGONAUTE4-containing nuclear processing centercolocalized with Cajal bodies in Arabidopsis thaliana Cell 126:93-106.
   Simon W. L. Chan,Ian R. Henderson, Xiaoyu Zhang, Govind Shah, Jason S. C. Chien, and Steven E.Jacobsen. (2006) RNAi, DRD1, and histone methylation actively target developmentallyimportant non-CG DNA methylation in Arabidopsis PLoS Genetics 2(6):791-797.
   Ian R Henderson,Xiaoyu Zhang, Cheng Lu, Lianna Johnson, Blake C Meyers, Pamela J Green andSteven E Jacobsen. (2006) DissectingArabidopsis thaliana DICER function in small RNA processing, gene silencing andDNA methylation patterning Nature Genetics 38: 721-725.
   Sibum Sung,Yuehui He, Tifani W. Eshoo, Yosuke Tamada, Lianna Johnson, Kenji Nakahigashi,Koji Goto, Steve E. Jacobsen, and Richard M. Amasino. (2006) Epigenetic maintenance of thevernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN1 Nature Genetics 38:706-710.
   Joshua S. Mylne,Lynne Barrett, Federico Tessadori, Stéphane Mesnage, Lianna Johnson, Yana V. Bernatavichute, Steven E. Jacobsen, Paul Fransz and Caroline Dean. (2006) LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required forepigenetic silencing of FLC Proc Nat. Acad Sci U S A 103:5012-5017.
   Hang Gyeong Chin,Debasis Patnaik, Pierre-Olivier Estève, Steven E. Jacobsen, and SriharsaPradhan. (2006) Catalytic properties and kinetic mechanism of human recombinantLys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomainin enzymatic catalysis  Biochemistry 10:3272-3284.
   Assaf Zemach, YanLi, Bess Wayburn, Hagit Ben-Meir, Vladimir Kiss, Yigal Avivi, Vyacheslav Kalchen ko,Steven E. Jacobsen, and Gideon Grafi. (2005) DDM1 binds Arabidopsis Methyl-CpGBinding Domain proteins and affects their subnuclear localization  Plant Cell 17:1549-1558.
   Simon W. L. Chan,Ian R. Henderson, and Steven E. Jacobsen. (2005) Gardening the genome: DNA methylation in Arabidopsis thaliana Nature Reviews Genetics 6:351-360.
   Robert K. Tran,Jorja G. Henikoff, Daniel Zilberman, Renata F. Ditt, Steven E. Jacobsen andSteven Henikoff.(2005) DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes Current Biology 15:154-159.
   Todd C. Mockler,Simon Chan, Ambika Sundaresan, Huaming Chen, Steven E. Jacobsen and Joseph R. Ecker. (2005) Applications of DNA Tiling Arrays for Whole-Genome Analysis Genomics 85:1-15.
    Lianna Johnson,Sahanna Molla, Benjamin A. Garcia, Tara L. Muratore, Jeffrey Shabanowitz,Donald F. Hunt and Steven E. Jacobsen. (2004) Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications Nucleic Acids Research 32: 6511-6518.
    Debasis Patnaik,Hang Gyeong Chin, Pierre-Olivier Esteve, Jack Benner, Steven E. Jacobsen, and Sriharsa Pradhan (2004) Substrate specificity and kinetic mechanism ofmammalian G9a histone H3 methyltransferase   Journal of Biological Chemistry 279:53248-53258.
    Anders MLindroth, David Shultis, Zuzana Jasencakova, J?rg Fuchs, Lianna Johnson, DanielSchubert, Debasis Patnaik, Sriharsa Pradhan, Justin Goodrich, Ingo Schubert,Thomas Jenuwein, Sepideh Khorasanizadeh, and Steven E Jacobsen. (2004) Dualhistone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3 EMBO 23: 4286-4296.
    Kevin V. Morris,Simon W. L. Chan, Steven E. Jacobsen, and David J. Looney. (2004) Small interfering RNA-induced transcriptional gene silencing in human cells Science 305:1289-1292.
    Daniel Zilberman,Xiaofeng Cao, Lisa K. Johansen, Zhixin Xie, James C. Carrington and Steven E.Jacobsen.(2004) Role of Arabidopsis ARGONAUTE4 in RNA-Directed DNA MethylationTriggered by Inverted Repeats  Current Biology 14: 1214-1220.
    James P. Jackson,Lianna Johnson, Zuzana Jasencakova, Xing Zhang, Laura Perez-Burgos, Prim B.Singh, Xiaodong Cheng, Ingo Schubert, Thomas Jenuwein, Steven E. Jacobsen.(2004) Dimethylation of histone H3 lysine 9 is acritical mark for DNA methylation and gene silencing in Arabidopsis thaliana Chromosoma 112: 308-315.
   Zhixin Xie, LisaK. Johansen, Adam M. Gustafson, Kristin D. Kasschau, Andrew D. Lellis, DanielZilberman, Steven E. Jacobsen, and James C. Carrington. (2004) Genetic and Functional Diversificationof Small RNA Pathways in Plants PLoS Biology 2:642-652.
   Tetsu Kinoshita,Asuka Miura, Yeonhee Choi, Yuki Kinoshita, Xiaofeng Cao, Steven E. Jacobsen,Robert L. Fischer and Tetsuji04 Simon W.-L. Chan,Daniel Zilberman, Zhixin Xie, Lisa K. Johansen, James C. Carrington, and StevenE. Jacobsen. (2004) RNA silencing genes control de novo DNA methylation Science 303:1336.
    Xiaofeng Cao,Werner Aufsatz, Daniel Zilberman, M. Florian Mette, Michael S. Huang, MarjoriMatzke and Steven E. Jacobsen. (2003) Role of the DRM and CMT3 Methyltransferases in RNA-directed DNA Methylation Current Biology 13: 2212-2217.

    Daniel Zilberman,Xiaofeng Cao and Steven E. Jacobsen. (2003) ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation Science 299: 716-719.

    Masaomi Kato,Asuka Miura, Judith Bender, Steven E. Jacobsen, and Tetsuji Kakutani. (2003) Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis Current Biology 13:421-426.

    Wim J.J. Soppe,Zuzana Jasencakova, Andreas Houben, Tetsuji Kakutani, Armin Meister, Michael S.Huang, Steven E. Jacobsen, Ingo Schubert, and Paul F. Fransz. (2002) DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis EMBO 21:6549-6559.
Stephen E.Schauer, Steven E. Jacobsen, David W. Meinke, and Animesh Ray. (2002) DICER-LIKE1: Blind men and elephants in Arabidopsis development Trends in Plant Science 7:487-491.
    Lianna M.Johnson, Xiaofeng Cao and Steven E. Jacobsen. (2002) Interplay between twoepigenetic marks: DNA methylation and histone H3 lysine 9 methylation Current Biology 12:1360-1367.
    Xiaofeng Cao andSteven E. Jacobsen. (2002) Locus specific control of asymmetric and CpNp Gmethylation by the DRM and CMT3 methyltransferase genes Proc Nat. Acad Sci U S A 99:16491-16498.
    Yeonhee Choi,Mary Gehring, Lianna Johnson, Mike Hannon, John J. Harada, Robert B. Goldberg, Steven E. Jacobsen, Robert L. Fischer. (2002) DEMETER, a DNA Glycosylase DomainProtein, Is Required for Endosperm Gene Imprinting and Seed Viability in Arabidopsis Cell 110:33-42.
    Xiaofeng Cao andSteven E. Jacobsen. (2002) Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing Current Biology 12:1138-1144.
    James P. Jackson,Anders M. Lindroth, Xiaofeng Cao, Steven E. Jacobsen. (2002) Control of CpNpG DNA methylation bythe KRYPTONITE histone H3 methyltransferase Nature 416: 556-560.
    Nancy A. Eckardt,Takashi Araki, Christoph Benning, Pilar Cubas, Justin Goodrich, Steven E.Jacobsen, Patrick Masson, Eiji Nambara, Rudiger Simon, Shauna Somerville, andGeoff Wasteneys. (2001) Arabidopsis Research 2001 Plant Cell 13(9): 1973-1982.
    Cindy Sue Malone,Maurine D. Miner, Jeanette R. Doerr, James P. Jackson, Steven E. Jacobsen, Randolph Wall, and Michael Teitell. (2001) CmC(A/T)GG DNA Methylation in MatureB Cell Lymphoma Gene Silencing Proc Nat. Acad Sci U S A 98: 10404-10409.
    Anders Lindroth,Xiaofeng Cao, James P. Jackson, Daniel Zilberman, Claire M. McCallum, Steven Henikoff, Steven E. Jacobsen. (2001) Requirement of CHROMOMETHYLASE3 for maintenanceof CpXpG methylation Science 292:2077-2080.
    Naoki Kishimoto,Hajime Sakai, James Jackson, Steven E. Jacobsen, Elliot M. Meyerowitz,Elisabeth S. Dennis and E. JeanFinnegan. (2001) Site specificity of the Arabidopsis MET1 DNA methyltransferasedemonstrated through hypermethylation of the superman locus Plant Molecular Biology 46:171-183.
    Wim J.J. Soppe,Steven E. Jacobsen, Carlos Alonso-Blanco, James Jackson, Tetsuji Kakutani,Maarten Koornneef and Anton J.M. Peeters. (2000) The late flowering phenotypeof fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomaingene Molecular Cell 6:791-802.
    Hajime Sakai,Beth A. Krizek, Steven E. Jacobsen, and Elliot M. Meyerowitz. (2000) Regulation of SUP Expression Identifies Multiple Regulators Involved inArabidopsis Floral Meristem Development Plant Cell 12:1607-1618.
    Xiaofeng Cao,Nathan M. Springer, Michael G. Muszynski, Ronald L. Phillips, Shawn Kaeppler,and Steven E. Jacobsen. (2000) Conserved plant genes withsimilarity to mammalian de novo DNA methyltransferases Proc Nat. Acad Sci U S A 97: 4979-4984.
    Steven E.Jacobsen, Hajime Sakai, E. Jean Finnegan, Xiaofeng Cao and Elliot. M. Meyerowitz.(2000) Ectopic hypermethylation of flower-specific genes in Arabidopsis Current Biology 10:179-186.
    Steven E.Jacobsen, Mark P. Running, and Elliot M. Meyerowitz. (1999) Disruption of anRNA helicase/ RNAse III gene in Arabidopsis causes unregulated cell division infloral meristems Development 126:5231-5243.
    Steven E.Jacobsen.(1999) Gene silencing: Maintaining methylation patterns Current Biology 9:617-619.
    Steven E.Jacobsen and Elliot M. Meyerowitz. (1997) Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis Science 277:1100-1103.
    Steven E.Jacobsen, Kalli A. Binkowski and Neil E. Olszewski. (1996) SPINDLY,atetratricopeptide repeat protein involved in gibberellin signal transduction in Arabidopsis Proc Nat. Acad Sci U S A 93:9292-9296.
    Steven E. Clark,Steven E. Jacobsen, Joshua Z. Levin, and Elliot M. Meyerowitz. (1996) The CLAVATA and SHOOT MERISTEMLESS loci competitively regulate meristem activity in Arabidopsis Development 122:1567-1575.
    Karen M.Leon-Kloosterziel, Marta Alvarez Gil, Gerda J. Ruijs, Steven E. Jacobsen, NeilE. Olszewski, Steven H. Schwartz, Jan A. D. Zeevaart, and Maarten Koornneef.(1996) Isolation and characterization of abscisic acid-deficient Arabidopsismutants at two new loci The Plant Journal 10:655-661.
    Steven E.Jacobsen and Neil E. Olszewski. (1996) Gibberellins regulate the abundance of RNAs with sequence similarity to proteinase inhibitors, dioxygenases, and dehydrogenases Planta 198:78-86.
    Steven E.Jacobsen, Shi Lifang, Zhanguo Xin, and Neil E. Olszewski. (1994) Gibberellin-induced changes in the translatable mRNA populations of stamens and shoots of gibberellin-deficient tomato Planta 192:372-378.

    Steven E.Jacobsen and Neil E. Olszewski. (1993) Mutations at the SPINDLY locus of Arabidopsis alter gibberellin signal transduction The Plant Cell